Publications

1. 
   Physical Consistency Bridges Heterogeneous Data in Molecular Multi‑Task Learning

   Yuxuan Ren†, Dihan Zheng†, Chang Liu*, Peiran Jin, Yu Shi, Lin Huang, Jiyan He, Shengjie Luo, Tao Qin, Tie-Yan Liu., et al.

   NeurIPS, 2024

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2. 
   Neural P3M: Long‑Range Interaction Modeling Enhancer for Geometric GNNs

   Yusong Wang†, Chaoran Cheng†, Shaoning Li†, Yuxuan Ren, Bin Shao, Ge Liu, Pheng-Ann Heng, Nanning Zheng.

   NeurIPS, 2024

   PDF
3. 
   CryoGEN: Energy‑based Cryo‑ET Reconstruction

   Yunfei Teng†, Yuxuan Ren†, Kai Chen, Xi Chen, Zhaoming Chen, Qiwei Ye.

   ICLR, 2025 (preprint)

   PDF
4. 
   EPO: Diverse and Realistic Protein Ensemble Generation via Energy Preference Optimization

   Yuancheng Sun, Yuxuan Ren, Zhaoming Chen, Xu Han, Kang Liu, Qiwei Ye.

   AAAI, 2026 (preprint)

   PDF
5. 
   Constraint Decoupled Latent Diffusion for Protein Backmapping

   Xu Han, Yuancheng Sun, Kai Chen, Yuxuan Ren, Kang Liu, Qiwei Ye.

   JCTC

   PDF